Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQ---LETMKDKIQTLDYLFQNCKPEFLGGTVDEWLNENSSDTIEKSVDMIRHHPLVPSY------VKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
3UCJ Chain:A ((36-207))
--GSQAPEYLYIGCADSRVSPA--QLFNMAPGEVFVQRNVGNLVSNKDLNCMSCLEYTVDHLKIKHILVCGHYNCGACKAGLVWHPKTAGVTNLWISDVREVRDKNAAKLHGLSADDAWDKMVELNVEAQVFNVCASPIVQAAWARGQPLSVHGIVYTPGTGLVKELIKPITGMED--------
General information:
TITO was launched using:
RESULT:
Template:
3UCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44786 for 1264 contacts (-35.4/contact) +
2D Compatibility (PS) -16840 + (NN) -534 + (LL) 808
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -68402.0 ( -54.12 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_3UCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UCJ-query.scw
PDB file :
Tito_Scwrl_3UCJ.pdb
: