Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQS-QNDFTFPSDTYLLLYFWSMSCPNCHQLTDKVL---QDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGW--DKMLKKIAGL
3KCM Chain:A ((5-140))
---ENPAPDFT--LNTLNGEVVKLSDL-KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEG----GKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNN-
General information:
TITO was launched using:
RESULT:
Template:
3KCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128178 for 921 contacts (-139.2/contact) +
2D Compatibility (PS) -13639 + (NN) -5252 + (LL) 624
1D Compatibility (HY) -8800 + (ID) 1100
Total energy: -156345.0 ( -169.76 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3KCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KCM-query.scw
PDB file :
Tito_Scwrl_3KCM.pdb
: