Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTLWKVLKIVFVSLAALVLLVSVSVFIYHHFQLNKEAALLKGKGTVVDVDGKKMNVYQEGSGKDTFVFMSGSGIAAPAYEMKGLYSKFSKENKIAVVDRAGYGYSEVSH----DDRDIDTVLEQTRKALMKSGNKPPYILMPHSISGIEAMYWAQKYPKEIKAIIAMDIGLPQQYVTYK--LSGVDRLKVRGFHLLTSIGFHRFIPSAVYNPEVIRQSFLTDEEKEIYKAINFKQFFNADMEHELLQSYQNGSKSVNLPAPKETPVLILDAVSDQNRHSKYAIQNRKDYEAFAAQFNTADI-KELRGTHSIYLYQPDQIYKLSMEFMRKVR |
1WOM Chain:A ((6-270)) | -------------------------------------------------SILSRNHVKVKGSGKASIMFAPGFGCDQ--SVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLK-ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEK-NYIGWATVFAAT---VLNQPDRPEIKEELESRFCSTD--PVIARQFAKAAFFSDHREDLSK-VTVPSLILQCADDIIA-----PATVG--KYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYLKAH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52109 for 2230 contacts (-23.4/contact) +
2D Compatibility (PS) -27840 + (NN) -8817 + (LL) 5932
1D Compatibility (HY) -2800 + (ID) 1600
Total energy: -87234.0 ( -39.12 by residue)
QMean score : 0.398
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