Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK---APDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR--PNSKILNICDMP--VGIEDRMAQILGLSSRKEMKVRYYGLNHFG---WWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKI-DD-HASYIVDLARAIAYNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQVSVEKLTVEAWAEKSFQKLWQALILSKTVPNARVARLILEDLVEANKDFWPELDQSPTRIS
4ND2 Chain:A ((1-301))-MIERRKIAVIGSGQI-GGNIAYIVGKD--N--LADVVLFDIAEGIPQGKA---LDITHSMVMFGSTSKVIGTNDY-ADISGSDVVIITASIPGRPKDDRSE--------------------LLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVN-ASDVSANVIGGHGDGMVPATSSVSV-GGVPLSSFIKQG-----------------------------------LITQEQ------IDEIVCHT---RIAWKEVADN------------------LKT--GTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCSN-HYGVK-GIYMGVPTIIGKNGVEDILELDLTPLEQKLLGE--------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4ND2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1580 -211839 -134.08 -733.01
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -134.08
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.510

(partial model without unconserved sides chains):
PDB file : Tito_4ND2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ND2-query.scw
PDB file : Tito_Scwrl_4ND2.pdb: