Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLVSKLEETASEKPDSIACRF----KDHMMTYQELNEYIQRFADGLQEAGMEKGDHLALLLGNSPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESMHESLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPT------SAA-KQNQEPVPDDTAVILYTSGTTGKPKGAMLTHQNLYSNANDVAG---YLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGATVLIEPQFSPASVFKLVKQQQATIFAGVPTMYNYLFQHENGKKDDFSSIRLCISGGASMPVALLTAFEEKFGV-TILEGYGLSEASPVTCFNPFDRGRKPGSIGTSILHVENKVVDP-LGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALK-DGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKRSG-VTEEDIMQHCEKHLAKYK-RPAAITFLDDIPKNATGKMLRRALRDILPQ
2D1S Chain:A ((24-542))-SAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR---------GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILK-


General information:
TITO was launched using:
RESULT:

Template: 2D1S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 3092 -312916 -101.20 -625.83
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -101.20
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.537

(partial model without unconserved sides chains):
PDB file : Tito_2D1S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2D1S-query.scw
PDB file : Tito_Scwrl_2D1S.pdb: