Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRV--SADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVR----STRDVVGVLRAVLFAPED--------LGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQL---LAPESRSASIGYRASMDVTGPSEQSDIDRQLLAARL------LAALAARRDAELERGVCLVG---PHRDD-----LILRLGDQPAK---GFASHGEAWSL--AVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVLP |
| 4OC8 Chain:A ((2-388)) | TFFTGETLGQ------VDLIVDAVYAGYKTERG-GMADPLVPLVGVSRQGGFRYRGTRERPTLLVLTSN--------LAEPEWPDQLDETTGTFIYYGDNRHPGRLLHDTPRFGNQLLRQIFDWAHLGQRHLVPPILVFTTEATGRTFRFRGLAVPGSPALAATE--------DLVALWKTTEGQRFQNYKAVFTILD--EAVIPRAWVHAVGRGET--SGLAPVAWNAWLSAGGIRPLMAPRSLLVRSKAEQLPATPEDQALIEVIRQRYKENPFGFEACAGALTRLLLPDVARLDLTRPWRDGGRDGIGRLRIGQSPAAIEVDFALEAKCYGANNAVGVKEVSRLISRIKHREFGVLVTTSYVD-----RQAYQEVTDDGHPVILT--TAQDIVGLLRSAGVRTPTQVDAWLDGITASV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OC8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22835 for 2625 contacts (-8.7/contact) +
2D Compatibility (PS) -37468 + (NN) -10985 + (LL) 4420
1D Compatibility (HY) -8800 + (ID) 3650
Total energy: -79318.0 ( -30.22 by residue)
QMean score : 0.158
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