Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDDADLDLVRRTFA-AFARGDLAELTQCFAPDVEQFVPGKHALAGVFRGVDNVVACLGDTA-AAADGTMTVTLEDVLSNTDGQVIAVYRLRASR---------AGKVLDQREAILVTVAGGRITRLSEFYADPAATESFWA
4LGQ Chain:A ((6-138))
--MDTSKAVIQRFNREVIENGDMAAFAELVAPDFVNHSAPPG----VSPGPDGFAGFFTGMLHPALS-DIRVHIHEQIEEN-GKVVTRKTIEATHTGAFFGQPASGKRIAIHAMDIVVVRDGKYAEHWSCADLYGALAQIR-
General information:
TITO was launched using:
RESULT:
Template:
4LGQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77198 for 852 contacts (-90.6/contact) +
2D Compatibility (PS) -13231 + (NN) -6221 + (LL) 448
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -101702.0 ( -119.37 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_4LGQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LGQ-query.scw
PDB file :
Tito_Scwrl_4LGQ.pdb
: