Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDEL--TRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL
4HCJ Chain:A ((35-176))
--GYKTKVSSTFIGTAQGK-LGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSENVVV--SGNIVTANGPTSSKDFANAVVGVLNSL------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107637 for 1104 contacts (-97.5/contact) +
2D Compatibility (PS) -15178 + (NN) -7061 + (LL) 3372
1D Compatibility (HY) -4000 + (ID) 1500
Total energy: -132004.0 ( -119.57 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_4HCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HCJ-query.scw
PDB file :
Tito_Scwrl_4HCJ.pdb
: