Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAER---FGARLVA----------------SPQHADALLVTGVVTHNMA---------GPLRKTLEATPRPRVVIACGDCALNRGVFADAYG--VVGAVGEVVP----VDVEIAGCPPTPAAIMAALRSVTGK
1YQ9 Chain:A ((4-164))
-------------------------------KKRPSVVYLHNAECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGGYWGKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLT-
General information:
TITO was launched using:
RESULT:
Template:
1YQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85863 for 1030 contacts (-83.4/contact) +
2D Compatibility (PS) -13636 + (NN) -4098 + (LL) 2368
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -108529.0 ( -105.37 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1YQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQ9-query.scw
PDB file :
Tito_Scwrl_1YQ9.pdb
: