Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGN--GTVQATVSTTVE---------------VEGSAKPACVAESIVRYVA
4E3E Chain:A ((194-349))
----YLWDDYE--VGEKIDHVDGVTIEEAEHMQATRLYQNTARVHFNLHVEREGRFGRRIVYGGHIISLARSLSFNG--L-A-NALSIAAINSGRHTNPSFAGDTIYAWSEILAKMAIPGRTDIGALRVRTVATKDRPCHDFPYRDAEGNYDP-AVVLDFDYTVLMP-
General information:
TITO was launched using:
RESULT:
Template:
4E3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54033 for 990 contacts (-54.6/contact) +
2D Compatibility (PS) -14877 + (NN) -3646 + (LL) 1468
1D Compatibility (HY) 400 + (ID) 1300
Total energy: -71988.0 ( -72.72 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_4E3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E3E-query.scw
PDB file :
Tito_Scwrl_4E3E.pdb
: