Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPFDDPQAELAWMFLQS-LCEGGD--LDEGFALLSNDFTYWSIVTRTELDKKTFRRAVERRKQVF-EVNIELIRCVNEGETVVVEGHCDGVS--------ADRTRYDSPFVCIFETRDGMIISLREYSDTQSLAEVYPVACATPGRC
3KKG Chain:A ((6-144))
--PIE-QNVETVLRLFDEGWGA-QDGWRDVWRETMTPGFRSIFHSNQAVEGIEQAIAFNAVLFEGFPRLEVVVENVTVEGDNVVVQARLTGAQDGPFLGVPPSGQMVDVPDVTLFTLADGQVIEMRYFTDLLAVMTAISAPP------
General information:
TITO was launched using:
RESULT:
Template:
3KKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52559 for 850 contacts (-61.8/contact) +
2D Compatibility (PS) -13994 + (NN) -7103 + (LL) 52
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -76654.0 ( -90.18 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3KKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KKG-query.scw
PDB file :
Tito_Scwrl_3KKG.pdb
: