Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTVGSMNERVPDSSGLPLRAMVMVLLFLGVVFLLLVWQALGSSPNSEDDSSAISTMTTTTAAPTSTSVKPAAPRAEVRVYNISGTEGAAARTADRLKAAG---FTVTDVGNLSLPDVAATT-VYYTEVEGERATADAVGRTLGAAVELRLPELSDQPPGVIVVVTG
2N3Z Chain:A ((1-99))
-----------------------------------------------------MGRLVVVVTSEQLKEEVRKKFPQVEVRLVT---TEEDAKQVIKEIQKKGVQKVVLVGVSEKLLQKIKQEANVQVYRVTSNDELEQVVKDVKGSGLEHHHHHH-------------
General information:
TITO was launched using:
RESULT:
Template:
2N3Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9502 for 662 contacts (-14.4/contact) +
2D Compatibility (PS) -10390 + (NN) -1528 + (LL) 4116
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -21754.0 ( -32.86 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_2N3Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2N3Z-query.scw
PDB file :
Tito_Scwrl_2N3Z.pdb
: