Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGVSEAERRGHRKLVRFQARRAIGPIRPTSAAWDRD-FDPAGKRIAVVGTDAAAAHYISRLSESAASVTVFTQAPRRVVTGVPL--------------------WT----------T-------R---------------------------------AKRW-------------LRRRTGA--------------------EHPAVAWAT---AAIDALTSSGIRTSDGVEHPVDAIIYGTGFAIADQ-VGDQTLVGAGGVTIRQAWDDGMEPYLGVAVHGFPNYFFITGPDT-----------AAQARCVVECMKLMERTASRRIEVRRSSQQVFNERAQLKPAQPHRQTGGLEAFDLSSAATEDDQTYDGAATLTLAGARFRVRVRLTGHLDPIDGNYHWQGTVFDSLPETSLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASATT |
| 4AP3 Chain:A ((150-506)) | -FLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAG--DDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETGIVT-TGAHYDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDARGAAGIEGTPEAVADWVEECRNRAEASLLN----------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97780 for 1494 contacts (-65.4/contact) +
2D Compatibility (PS) -25205 + (NN) -13958 + (LL) 5052
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -146091.0 ( -97.79 by residue)
QMean score : 0.409
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