Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKD-FQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW
4QBK Chain:A ((6-191))
-----LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS-
General information:
TITO was launched using:
RESULT:
Template:
4QBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107855 for 1541 contacts (-70.0/contact) +
2D Compatibility (PS) -19661 + (NN) -3132 + (LL) 648
1D Compatibility (HY) -11600 + (ID) 3400
Total energy: -145000.0 ( -94.09 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_4QBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBK-query.scw
PDB file :
Tito_Scwrl_4QBK.pdb
: