Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQVYTSATHWGVFTARVHGGDIAAVAAL--------ASDTNPAPQ--LQNLPGAVRHRSRIANPAVRRGWLQHGPGPSSARGAEEFVEVSWDELIELLASELRRTVDRYGNEAIYGSSYGWASAGRFHHAQSQVHRFLNMLGGYTASRHSYSAGASEVIFPHIVGAALFEALAETT-TWD-VIVDHTALLVAFGGLPVKNTAVMPGGTTAHPDRDYVGRYRARGGRLVSVSPLRDDIAAIAGPLDDRCRWLAPVPGTDVAIMLGLAYVLATESLADRAFLGRYCTGY-------------------------------------------------------------------------------------------------ERFERYLLGLDDGIPKTPEWAAALSGLAAGDLRDLARRM-AEHRTLITTSLSLQRIEHGEQTVWMAATLAAMLGQIGLPGGGFGHGYSSNGVG---NPPLACGLPALPQG------NNPVSTF--IPVAAI---------SELLQRPGQRLAYNGRLLELPDIKCVYWAGGNPFHHHQNLPRLRRAL-SRVDTIVVHEQYWTAMAKHADIVVPTTTSFERDDFAASKTNPTLIAMPAMVPPYANARDDYHTFSALAHRLGFGKQFT--EGRSAREW-L-EHMYDKW----------------SAE----LDFPVPSFAEFWRTGRLE---LPTRT-GLTWLADFRA-DPAAHPLGTPSGRIEIFSDTVDAFALPDCAGHPTWYEPSEWLGGPRAARYPLHLIANQPRTRLHSQLDHG--GASMASKIRGREPIRIHPDDAAARELTDGDIVRVFNDRGACLAGVVIDDGLRPKVVQLSTGAWFDPADPRDPDSMCVHGNPNALSNDSGTSSL----------------AHGSTGQHVL-VQIERFTGELPPVRAHEPPRLA |
| 4YDD Chain:A ((31-896)) | -AHLVNCTGACPHFVYSKDGVVMREEQSKDIAPMPNIPEYNPRGCNKGECGHDYMYGPHRIKYPLIRVG----------ERGEGKWRRATWEEALDMIADKCVDTIKNHAPDCISVYSPVPA--VS-PVSFSAGHRFAHYIGAHAHT-----FYDWYGDHP--TGQT--QTCGVQGDTCETADWFNSKYIILWGSNPTQTRIP--------DA-HFLSEAQLNGAKIVSISPDYNSSTIKV------DKWIHPQPGTDGALAMAMAHVIIKEKLYDAHSLKEQTDLSYLVRSDTKRFLREADVVAGGSKDKFYFWNAKTGKPVIPKGSWGDQPEKKGSPVGFLGRNTFAFPKGYIDLGDLDPALEGKFNMQLLDGKTVEVRPVFEILKSRL-----MADNTPEKAAKITGVTAKAITELAREFATAKPSMIICGGGTQHWYYSDVLLRAMHLLTALTGTEGTNGGGMNHYIGQWKPAFVAGLV-ALAFPEGVNKQRFCQTTIWTYIHAEVNDEIISSDIDTEKYLRDSITTGQMPNMPE--QGRD-PKVFFVYRGNWLNQAKGQKYVLENLWPKLELIVDINIRMDSTALYSDVVLPSAHWYEKLDLNVTSEHSYINMTEPAIKPMWESKTDWQIFLALAKRVEMAAKRKKYEKFNDEKFKWVRDLSNLWNQMTMDGKLAEDEAAAQYILDNAPQSKGITIQMLREKPQRFKSNWTSPLKEGVPYTPFQYFVVDKKPWPTLTGRQQFYLDHDTFF--DMGVELPTYKAPID------ADKYPFRFNSPHSRHSVHSTFKDNVLMLRLQR---GGPSIEMSPLDAKPLGIKDNDWVEAWNNHGKVICRVKIRNGEQRGRVSMWHCPELYMDLL--------TGGSQSVCPV--RINPTNLVGNYGHLFFRPNYYGPAGSQRDVRVNVKRYIGATP----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YDD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239008 for 6309 contacts (-37.9/contact) +
2D Compatibility (PS) -73554 + (NN) -39376 + (LL) 2596
1D Compatibility (HY) -11200 + (ID) 6500
Total energy: -367042.0 ( -58.18 by residue)
QMean score : 0.406
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