Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MSDFDTERVSRAVAAALVGP-GGVALVVKVFAGLPG---VIHTPARRGFFRSN-PERIQIGDWRYEVAHDGRLL----------AAHMVN-GIV-IAEDALIAEAVGPHLARALGQIVSRYGATVIPN-INAAIE-VLGTGTDYRF
4MCJ Chain:A ((1-153))
GAQSEVVVLYPDTENKDLDEAVYQKIFLAGTIDMDWQKATCDWFRALPEGRYLLFNPRRDKGLSGEMSDFEHQVNWELEHLEKADLIIMNILASSKSPITLLEMGLFMRSGKLRVICEPGFYRYDNVRLTCARYGVPLYQNMDDFLKTMR---------
General information:
TITO was launched using:
RESULT:
Template:
4MCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49644 for 662 contacts (-75.0/contact) +
2D Compatibility (PS) -12372 + (NN) -3673 + (LL) 144
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -68395.0 ( -103.32 by residue)
QMean score : 0.115
(partial model without unconserved sides chains):
PDB file :
Tito_4MCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCJ-query.scw
PDB file :
Tito_Scwrl_4MCJ.pdb
: