Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MTRPRTDAIHHHVVVNAPIERAFAVFTTRFGDFKPREHNLLAIPITETVFECHAGG--HIYDRGVDGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWP-LYLRRYTDLLCIQVQP----
1X53 Chain:A ((1-145))
GSSGSSGIPTCKITLKETFLTSPEELYRVFTT--------QELVQAFTHAPATLEADRGGKFHMVDGNVSG------EFTDLVPEKHIVMKWRF-----KSWPEGHFATITLTFIDKN-GETELCMEGRGIP--------APEEERTRQGWQRYYFEGIKQTFGYGASGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1X53.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55685 for 981 contacts (-56.8/contact) +
2D Compatibility (PS) -14172 + (NN) -156 + (LL) 756
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -76457.0 ( -77.94 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_1X53.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X53-query.scw
PDB file :
Tito_Scwrl_1X53.pdb
: