Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MAMVNTTTRLSDDALAFLSERHLAMLTTLRAD-NSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRY--RTPRPNPRRVVIEVQIERVLGSADLLDRA--------------
2IAB Chain:A ((3-155))
TTPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGET--FLVATPAASPTGRNLSETGRVRLGIGPTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTSYLYFRISPRRVQAWREANELSGRELMRDGEWLVTD
General information:
TITO was launched using:
RESULT:
Template:
2IAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32482 for 966 contacts (-33.6/contact) +
2D Compatibility (PS) -14913 + (NN) -6282 + (LL) 248
1D Compatibility (HY) 400 + (ID) 1250
Total energy: -54279.0 ( -56.19 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_2IAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IAB-query.scw
PDB file :
Tito_Scwrl_2IAB.pdb
: