Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR--AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMAY
1R8D Chain:A ((2-46))
----------------------------KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADL---------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1R8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39281 for 257 contacts (-152.8/contact) +
2D Compatibility (PS) -4638 + (NN) 146 + (LL) 4924
1D Compatibility (HY) -1600 + (ID) 450
Total energy: -40899.0 ( -159.14 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_1R8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8D-query.scw
PDB file :
Tito_Scwrl_1R8D.pdb
: