Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMSEQTIYGANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDA-AEQTIADAIAVAEAGAFAVVMEMVPAELATQITGKLTIPTVGIGAGPNCDGQVLVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQYAQEVAGGVFPADEHSF
3VAV Chain:D ((13-275))-----------------RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTY-GTPADAFASAVKLMR-AGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAF----VQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF


General information:
TITO was launched using:
RESULT:

Template: 3VAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		3D Compatibility (PKB) -201531 for 2350 contacts (-85.8/contact) +
2D Compatibility (PS) -28464 + (NN) -12992 + (LL) -212
1D Compatibility (HY) -22400 + (ID) 5900
Total energy: -271499.0 ( -115.53 by residue)
QMean score : 0.547

(partial model without unconserved sides chains):
PDB file : Tito_3VAV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VAV-query.scw
PDB file : Tito_Scwrl_3VAV.pdb: