Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTETSPETPETTEAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQGRVGFEVKIHRIGADGAA----VLTERTDALIIGPLR-VQFWVCGVFEVDDGRITLWRDYFDVYDMFKGLLRGLVALVVPSLKATL
5AII Chain:C ((4-116))
-----------------LETVQLFLARVNALDLDGACALLAEDVVYDNVPMPTVHGRAAARAFLSQLPA-TAIDWETHAIAATGDAARGTVLTERTDRFTLADGRTLAIRVMGAFDVADGSITAWRDYFDL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
5AII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60421 for 737 contacts (-82.0/contact) +
2D Compatibility (PS) -11569 + (NN) -1328 + (LL) 3288
1D Compatibility (HY) -10400 + (ID) 2050
Total energy: -82480.0 ( -111.91 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_5AII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AII-query.scw
PDB file :
Tito_Scwrl_5AII.pdb
: