Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDRDRLRPPLDERSLRDQLIGAGSGWRQLD-----VVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGILAEVAQPF---VVLGVGLNVTQAPEEVDPDATSLLDLGVAAPDRNRIASRLLRELEA--RIIQWRNANPQLAADYRARSLTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGGRTVVVSAGDVVHLR
1BIB Chain:A ((65-304))
------------------QLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRI--GELKSGDACIAEYQQAGRGR------SPFGANLYLSMFWRLEQ-PAAAIG-LSLVIGIVMAEVLRKLGA---DKVRVKWPNDLYLQDRKLAGILVELTG--AAQIVIGAGINMAM--------WITLQEAGINL-DRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNF-INRPVKL-IIGDKEIFGISRGIDKQGALLLEQDG--------------
General information:
TITO was launched using:
RESULT:
Template:
1BIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109952 for 1642 contacts (-67.0/contact) +
2D Compatibility (PS) -22852 + (NN) -10973 + (LL) 2676
1D Compatibility (HY) -17600 + (ID) 3950
Total energy: -162651.0 ( -99.06 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_1BIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BIB-query.scw
PDB file :
Tito_Scwrl_1BIB.pdb
: