Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAV-PADRTDEARQILGH-RAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVD-ANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
3N9W Chain:B ((6-223))
------DVCAVVPAAG----------KQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSV---LAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNE--GATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAE-----
General information:
TITO was launched using:
RESULT:
Template:
3N9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123491 for 1672 contacts (-73.9/contact) +
2D Compatibility (PS) -21923 + (NN) -7692 + (LL) 1716
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -166090.0 ( -99.34 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_3N9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N9W-query.scw
PDB file :
Tito_Scwrl_3N9W.pdb
: