Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNWADVQSRYAAATSQTKGLIFG
1GN4 Chain:D ((2-199))
-AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDEQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNWADVQSRYAAATS--------
General information:
TITO was launched using:
RESULT:
Template:
1GN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74032 for 1474 contacts (-50.2/contact) +
2D Compatibility (PS) -21237 + (NN) -10040 + (LL) 612
1D Compatibility (HY) -26000 + (ID) 9850
Total energy: -140547.0 ( -95.35 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_1GN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GN4-query.scw
PDB file :
Tito_Scwrl_1GN4.pdb
: