Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSTVQAIRTVLFYLLL---------------SASAFVWGTLSFFIAPILP---FRARYRFVVQNWCRFAIWLTRVVAGIRYEVRGLENI-----PEKPCVILSKHQSTWETFFLSGFFEPLSQVLKRELLY-------VPFFGWALALLKPIAIDRSQPKLALKQLAKQGD------ECLKKGAWVLIFPEGTRIPVGQMG---------------------KFSRGGTALAVNAGLPVLPIAHNAGQYWPKAGWAKYPGTIQVVIGPAMHAEGEGPRAIAELNQRAEAWVSETMAEIS-------------------PIQQ--RVSHPEPSVVS |
3J40 Chain:A ((1-335)) | MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31624 for 1457 contacts (-21.7/contact) +
2D Compatibility (PS) -25794 + (NN) 7433 + (LL) 0
1D Compatibility (HY) 2000 + (ID) 1450
Total energy: -49435.0 ( -33.93 by residue)
QMean score : -0.004
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