Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSTVQAIRTVLFYLLL---------------SASAFVWGTLSFFIAPILP---FRARYRFVVQNWCRFAIWLTRVVAGIRYEVRGLENI-----PEKPCVILSKHQSTWETFFLSGFFEPLSQVLKRELLY-------VPFFGWALALLKPIAIDRSQPKLALKQLAKQGD------ECLKKGAWVLIFPEGTRIPVGQMG---------------------KFSRGGTALAVNAGLPVLPIAHNAGQYWPKAGWAKYPGTIQVVIGPAMHAEGEGPRAIAELNQRAEAWVSETMAEIS-------------------PIQQ--RVSHPEPSVVS
3J40 Chain:A ((1-335))MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA


General information:
TITO was launched using:
RESULT:

Template: 3J40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31624 for 1457 contacts (-21.7/contact) +
2D Compatibility (PS) -25794 + (NN) 7433 + (LL) 0
1D Compatibility (HY) 2000 + (ID) 1450
Total energy: -49435.0 ( -33.93 by residue)
QMean score : -0.004

(partial model without unconserved sides chains):
PDB file : Tito_3J40.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3J40-query.scw
PDB file : Tito_Scwrl_3J40.pdb: