Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSP--IEVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQPYLKAVFEALWVRQQNLGKPEVVAQV-LAEAGFDPDEFLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVGDQLFFGQDRLDFVAEVLAG
2IMF Chain:A ((1-193))
--MIVDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYGIPLVFPA--NYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAP-DLESLPALVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIERKVFGVPTMFLGDEMWWGNDRLFMLESAMGR
General information:
TITO was launched using:
RESULT:
Template:
2IMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119713 for 1453 contacts (-82.4/contact) +
2D Compatibility (PS) -20757 + (NN) -8109 + (LL) 284
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -164295.0 ( -113.07 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2IMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IMF-query.scw
PDB file :
Tito_Scwrl_2IMF.pdb
: