Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGRPQAVPTVQVDNAEVIVTEWRFAPGAETGRHRHG-HDYVVVPLTDGTLLLETPEGDRHAPLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK
1O4T Chain:A ((56-130))
----------------ARLFARMKLPPGSSVGLHKHEGEFE-IYYILLGEGVFHDN-GK-DVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVIIL
General information:
TITO was launched using:
RESULT:
Template:
1O4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21831 for 498 contacts (-43.8/contact) +
2D Compatibility (PS) -8051 + (NN) -1049 + (LL) 1224
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -34057.0 ( -68.39 by residue)
QMean score : 0.257
(partial model without unconserved sides chains):
PDB file :
Tito_1O4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4T-query.scw
PDB file :
Tito_Scwrl_1O4T.pdb
: