Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MAFSTQDSDEVLSEINVTPLVDVM------LVLLVVFIVTAPLLTNSIPINLPKTESVAPPEQKDPLVVSIDGAGKLFVNKDEIQPELLESNLAAAKAKDAEVRVQLQADEGVNYGQVAKAMASIERAGITRLAVITAR
1PP7 Chain:U ((5-118))
DLEASFTSRLPPEIVAALKRKSSRDPNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTEFKMKKKNVALVMGI--------KLNTLNVNLRDLAF-----------EQLQHDKG--------GWTQWKRSGFTRNSVFED-
General information:
TITO was launched using:
RESULT:
Template:
1PP7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27951 for 671 contacts (-41.7/contact) +
2D Compatibility (PS) -10531 + (NN) 2126 + (LL) 2108
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -41348.0 ( -61.62 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_1PP7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PP7-query.scw
PDB file :
Tito_Scwrl_1PP7.pdb
: