Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSNSLALKGRSDAYTQVDNFLHAYARGGDELVNGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVD--AGQGDQGDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDF----KGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRDFVSGQDKIDLSGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAHADFAINLIGQATQADIVV |
| 3U1R Chain:A ((20-479)) | ---------GTSSAFTQVDNFSHFYDRG-NHLVNGKPSFTVDQAADQLTRSGASWYDLNGDGVINLSYTFLTSP------PPGYASR--GLGTFSSFSGLQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPN--SSRKGESWYLINKDYDVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDY-----NPSYRDAVYGEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGANMETRAGDTVYGFNSTADRDYYSATSATDKLIFSVWDGGGNDTLDFSGFSQNQKINLAAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLLGNAASNILKGGAGNDIIYGGGGADKLWGGSGSDTFVYREVSDSTPKAADTLMDFQTGLDKIDLTGITHLSG----LNFVNAFTGQAGDAVVSYNQASNAGSLQVDFSGHGVADFLITTVGQVATYDIVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U1R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65042 for 3990 contacts (-16.3/contact) +
2D Compatibility (PS) -48030 + (NN) -20231 + (LL) 708
1D Compatibility (HY) -41600 + (ID) 14850
Total energy: -189045.0 ( -47.38 by residue)
QMean score : 0.774
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