Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKATG-DVRAVADGSQIDWQAT-GNLVVPVVAYVDD-KPVFRAEITMYVSQA
3NWZ Chain:A ((46-164))
-----------------------TYLASLTQIESQEREDGRFEVRLPIGPLVNNPLNMVHGGITATLLDTAMGQMVNRQLPDGQSAVTSELNIHYVKPGMGTYLRAVASIV----HQGKQRIVVEGKVYTDQGETVAMGTGSFFVL--
General information:
TITO was launched using:
RESULT:
Template:
3NWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72565 for 886 contacts (-81.9/contact) +
2D Compatibility (PS) -12721 + (NN) -2711 + (LL) 2928
1D Compatibility (HY) -2400 + (ID) 1300
Total energy: -88769.0 ( -100.19 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_3NWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWZ-query.scw
PDB file :
Tito_Scwrl_3NWZ.pdb
: