Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLHIDSSILGDASASRQLSAELVQAWRQNEDGLDVTYRDLAADAVAHFSALTLAAGSTP-AELRDAALKHEVAVGEEVLEEFLAADVVVIGAPMYNFTISSQLKAWIDRIAVAGKTFRYTENG--PVGLAGDKKVVIVSTAGGVHAGQPTGAAH---EGYLRTVLGFFGITDIEVVRAEGLAYGEEPRTQAIAAARRQIAGQFAAA
4N9Q Chain:B ((3-186))
-RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDF----YRPL-LRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEDSCDEAEQRLLALA-----------
General information:
TITO was launched using:
RESULT:
Template:
4N9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87598 for 1282 contacts (-68.3/contact) +
2D Compatibility (PS) -18701 + (NN) -9520 + (LL) 664
1D Compatibility (HY) -14800 + (ID) 2850
Total energy: -132805.0 ( -103.59 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4N9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N9Q-query.scw
PDB file :
Tito_Scwrl_4N9Q.pdb
: