Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEYLPTSTANGLPHNLQRGERLASIGAGLVLAGFGLARGGLPGACKAVAGGLLVSRGLSGHCHVKGLLNEPREELQLLREEVQHLTRRLQRLQERQRDDSRQDAALDAELPPNLP
1KD8 Chain:A ((1-35))
-------------------------------------------------------------------EVKQLEAEVEEIESEVWHLENEVARLEKENAECEA--------------
General information:
TITO was launched using:
RESULT:
Template:
1KD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3990 for 133 contacts (30.0/contact) +
2D Compatibility (PS) -4197 + (NN) -3884 + (LL) 3048
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -3393.0 ( -25.51 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1KD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KD8-query.scw
PDB file :
Tito_Scwrl_1KD8.pdb
: