Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNAYLSDQPVRLSPLRDEQGNQPRFGLLLEPGRPGMHVGELPAQWLKGLARSHHLLLLRGFAAFADAESLTRYCHDFGEVMLWP----FGAVLELVEQEGAEDHIFANNYVPLHWDGMYLETVPEFQVFHCVDAPGDSDGGRTTFSSTPAALQLADSSELEL---------WRRASGRYQRSAAHYSSRSAAPIVERHPRREFPILRFCEPPVEGDASFINPS-EFHYDGIAPEQRGELLASLRRCLYHPQAHYAHRWRSDDLVIADNLTLLHGREAFAHRAPRHLRRVHIHAEPALRNPHLQRD |
| 1GQW Chain:A ((4-282)) | --------RLSITPL------GPYIGAQISG--ADRPLSDNQFEQLYHAVLRHQVVFLRD--QAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDND--NWHTDVTFIETPPAGAILAAKELP--STGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFPEYKYRKTEEEHQRWREAVAKNPPLLHPVVRTH-PVSGKQALFVNEGFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQHYANADYLPQRRIMHRATILGDKPFYRA----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -123828 for 2070 contacts (-59.8/contact) +
2D Compatibility (PS) -27550 + (NN) -4683 + (LL) 1260
1D Compatibility (HY) -3200 + (ID) 2750
Total energy: -160751.0 ( -77.66 by residue)
QMean score : 0.403
|
|
|