Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MTLLTELLDELRHPA-----VRDLAWTLLAPPLLRRTPE--PQRHPLAASRWRQEPERLAAWLREQERQPQHLAAWLAQWPRQRLGLYYEHLWQFALEQAPDVRLIAANLPVRDGGHTLGELDLLLRDDDGIHHLELAIKLYLGPQSGPGDWLGPGGQDRLSRKLEHL-----CRHQLPLAATREGRQVLAAHGAESAVSALWLSGYLFHPWPGPGSLPADIEPRHLRGRWLRQRDWPAYLASLAGPQTGQHWLHLSREHWLAPAMRRQD----PLDPPRDGACWNIAFADEA--------RPQMLVRVVPRDG---------------YWVEAERLFLASDDWPPGLSLWGSARQAADA----------------------------------------------------- |
| 3S5W Chain:A ((29-448)) | VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVAS-HFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSP----------GGTPRIPQVFRALKGDGRVFHHSQYLEHMAKPMKIAIIGGGQSAAEAFIDLNDSYP-----SVQADMI---LRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLRQLLEPLAEYLGEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQHLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S5W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -55883 for 1949 contacts (-28.7/contact) +
2D Compatibility (PS) -31080 + (NN) -10147 + (LL) -780
1D Compatibility (HY) -5600 + (ID) 1800
Total energy: -105290.0 ( -54.02 by residue)
QMean score : 0.101
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