Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIIETIKEQIANNPILLYMKGSPNAPQCGFSSRAAQVLMACGEK---FAYVDILQNPEIRANLPKYANWPTFPQLWVNGELVGGSDILAEMFEKGELQTLVKDAAAKANA
3GX8 Chain:A ((4-109))
-EIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQA----
General information:
TITO was launched using:
RESULT:
Template:
3GX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69676 for 771 contacts (-90.4/contact) +
2D Compatibility (PS) -11411 + (NN) -6153 + (LL) 480
1D Compatibility (HY) -10800 + (ID) 2050
Total energy: -99610.0 ( -129.20 by residue)
QMean score : 0.798
(partial model without unconserved sides chains):
PDB file :
Tito_3GX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GX8-query.scw
PDB file :
Tito_Scwrl_3GX8.pdb
: