Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEAD-CAKGFLFDGFPRTIPQAE----ALKDAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
1DVR Chain:B ((5-193))
IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72803 for 1261 contacts (-57.7/contact) +
2D Compatibility (PS) -20130 + (NN) -11473 + (LL) 2132
1D Compatibility (HY) -16000 + (ID) 4900
Total energy: -123174.0 ( -97.68 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1DVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVR-query.scw
PDB file :
Tito_Scwrl_1DVR.pdb
: