Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFFAATEVCERIR
1NHK Chain:L ((1-137))
-AIERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEI-----
General information:
TITO was launched using:
RESULT:
Template:
1NHK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47847 for 1060 contacts (-45.1/contact) +
2D Compatibility (PS) -14553 + (NN) -2536 + (LL) 772
1D Compatibility (HY) -14400 + (ID) 4300
Total energy: -82864.0 ( -78.17 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1NHK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NHK-query.scw
PDB file :
Tito_Scwrl_1NHK.pdb
: