Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALTNEDIINAVSEMSVMQVVELIKAMEEKFGVTAAAATVAAAGPAAAAAEEQTEFTIVLAEAG-DKKVNVIKVVRELTGLGLKEAKAVVDGAP----GVVKEGASKEEAEAAKKALE------EAGAKVELK
2W9R Chain:A ((23-103))
--------------------------------------------------KPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVF-TAEVAETKVAMVNKYARENEHPLLCTL-
General information:
TITO was launched using:
RESULT:
Template:
2W9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16985 for 448 contacts (-37.9/contact) +
2D Compatibility (PS) -7695 + (NN) -1735 + (LL) 5596
1D Compatibility (HY) -6800 + (ID) 500
Total energy: -28119.0 ( -62.77 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_2W9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W9R-query.scw
PDB file :
Tito_Scwrl_2W9R.pdb
: