Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAIFAERALLPE----GWARNVRFEISADGVLAEIRPDANA-----DGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELM-YRMV-ARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAP--LEAAGHSLGLCFHSLRAVTPQQIATVLAAGHD-DLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHV---SLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQP--IGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAG--EERSARAFVQVLGELLD |
| 3LNP Chain:A ((26-464)) | --RINSHWIIPIENTVSNILIDHCLLI-KDGIILAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAMSLFRGLAD-----DLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMYFYPQ---------------QSGEAALAAGIRAVCFAPVLDFPTNY---AQN----ADEYIRKAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFNKRPTQRLADIGFLNERVSCVHMTQVDDGDIKILQKTGASIIHCPESNLKLASGFCPIAKLSAANIPLAIGTDGAASNNDLDMFSETKTAALLAKGVSQD-------ASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQP--VFDPVSHMVYCTKSTQVSHVWVNGRCLLKNGELTTLNEETLINHAKAWASAIR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -298054 for 3811 contacts (-78.2/contact) +
2D Compatibility (PS) -44121 + (NN) -14975 + (LL) 1152
1D Compatibility (HY) -8800 + (ID) 4500
Total energy: -369298.0 ( -96.90 by residue)
QMean score : 0.506
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