Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNYKLLYFNMRGRAEIIRYIFAYLDIKYEDHRIEQADWPKIKPTLPFGKIPVLEVEGLTIHQSLAIARYLTKNTDLAGKTALEQCQADAVVDTLDDFMSLFPWAEKDQDLKERMFNELLTHQAPRLLKDLDTYLGDKEWFIGNYVTWADFYWDICSTTLLVLKPGLLDIYPKLVSLRNKVQAIPAISAWILKRPQTKL
4EE0 Chain:A ((2-199))
-PNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIE----PEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGNSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKRRPQTKL
General information:
TITO was launched using:
RESULT:
Template:
4EE0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144568 for 1400 contacts (-103.3/contact) +
2D Compatibility (PS) -20609 + (NN) -8189 + (LL) 552
1D Compatibility (HY) -27600 + (ID) 7750
Total energy: -208164.0 ( -148.69 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_4EE0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EE0-query.scw
PDB file :
Tito_Scwrl_4EE0.pdb
: