Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MAIHKALVMCLGLPLFLFPGA------WAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAGIVTT--FVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHN-SPTWDDPTLAIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQKGQSMFVENKAFSMDEPVAAKRPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAEDMYSAQSHQAATPPKDGKNSQVFRNPYVWD--- |
| 4LDV Chain:A ((16-356)) | SDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAETDEVYAQITLLPELDQSEPTSPDAPVQETVHSFCKTLT----------ASDTSTHGG------------FSVLRRHADDCLPPLDMSQQPPWQELVATDLH--------NSEWHFRHIFRGQP------------------------------RRHLLTTG-----WSVFVSS-KKLVAGDAFIFLRGENE---------ELRVGVRRHMPSSVISSHSMHIGVLATAAHAITT--------------------------GTIFSVFYKPRTSRSEF----IVSVNRYLEAKT-------------------------QKLSVGMRFKMRFKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERV--SPWELEPLN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177377 for 2171 contacts (-81.7/contact) +
2D Compatibility (PS) -33458 + (NN) -14958 + (LL) 10896
1D Compatibility (HY) -8800 + (ID) 2900
Total energy: -226597.0 ( -104.37 by residue)
QMean score : 0.253
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