Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINQVYQLVAPRQ-FDVTYNNVD-IYGNHVIVRPLYLSICAADQRYYTGRRDENVLRKKLPMSLVHEAVGEVVFDSKG--VFEKGTKVVMVPNTPTEQH---HIIAENYLASSYFR----------------------SSGYDGFMQDYVVMAHDRIVPLPNDIDLSTIS-YTELVSVSYHAIQRFERKSIPLKNSFGIWGDGNLGYITAILLRKLYPEAKIYVFGKTDYKLSHFS--FVDDIFTVNQ----------IPDDLKIDHAFECVGGKGSQVALQQIVEHISPE-GSIALLGVSELP--VEVNTRLVLEKGLTLIGSSRS---GSKDFEQVVDLYRKYPDIVEKLALLKGHEINVCTMQDIVQAFEMDLSTSWGKTVLKWTI |
| 3UKO Chain:A ((7-377)) | ITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAK--VEPGSNVAIFGLGTVGLAVAEGAKT-AGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRTQVPWLVEKYM-NKEI--KVDEYITHNL---TLGEINKAFDLLHEGTCLRCVLDTS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204663 for 2832 contacts (-72.3/contact) +
2D Compatibility (PS) -35308 + (NN) -11708 + (LL) 1388
1D Compatibility (HY) -8000 + (ID) 2850
Total energy: -261141.0 ( -92.21 by residue)
QMean score : 0.442
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