Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKV-HSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATD--DFDYIVAMDQSNVDNIKSINP-NLKGQLFKLLEF-SNMEESDVPDPYY--TNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
3JS5 Chain:A ((26-168))
-----FVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDS-ISRPVVSSDFKNFDYIFAMDNDNYYELLDRCPEQYKQKIFKMVDFCTTIKTTEVPDPYYGGEKGFHRVIDILEDACENLI------------
General information:
TITO was launched using:
RESULT:
Template:
3JS5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56347 for 1133 contacts (-49.7/contact) +
2D Compatibility (PS) -14188 + (NN) -5691 + (LL) 1504
1D Compatibility (HY) -14000 + (ID) 2550
Total energy: -91272.0 ( -80.56 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_3JS5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JS5-query.scw
PDB file :
Tito_Scwrl_3JS5.pdb
: