Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLRKVIMQDLDQIIALENIGFSPE---EAATREALKLRIEQIQETFIVAEKNDEVIGYINGPVIKERYISDDLFKNVSINNSEGGYISVLGLVVAPNYQGQGIAGRLLNYFETLAKN-HHRHGVTLTCRESLISFYEKYGYRNEGVSESCHGGIKWYNLVKNIKKDDEV
1CJW Chain:A ((6-165))
NEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESL---ALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCS-------
General information:
TITO was launched using:
RESULT:
Template:
1CJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89167 for 1203 contacts (-74.1/contact) +
2D Compatibility (PS) -17323 + (NN) -8316 + (LL) 652
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -121704.0 ( -101.17 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1CJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CJW-query.scw
PDB file :
Tito_Scwrl_1CJW.pdb
: