Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQKNDDLLRERRKDEHVALGVKQNEQLAPSS--LKDIQLIGTSIPRYNVKDIDLTTTIFGKNVPFPFYINAMTGGSRHTKKINAELAEIAREVAIPMAVGSQSAALKNSSLIDTYNIVREINPNGMILANVS-PEVAIQDGLQ----AIEMLEANALQIHINPAQELVMQEGDRSFS-HWLTRIEEYVKLSPVPIVVKEVGFGMTRETVKTLADIGVQTVDLAGKGGTNFAQIE--NDRRR-----DQAYDFLLDWGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIIKALALGADSVGMAGQIIYSL--KKEGVTKTIEKLELWKEQLRGLFVLANAKNIAELKTTPLIVSGELAKWGTLREINLVKLANRK |
3B03 Chain:D ((7-358)) | -----------RKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNF-LDWGVPTAASIMEVRY-SVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIF---ELKAAMMLTGSKDVDALKKTSIVILGKLKEWAEYRGINL------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3B03.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -159680 for 2984 contacts (-53.5/contact) +
2D Compatibility (PS) -36224 + (NN) -10735 + (LL) 2096
1D Compatibility (HY) -27600 + (ID) 6300
Total energy: -238443.0 ( -79.91 by residue)
QMean score : 0.506
|
|
|