Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAG-GDHCAEHGCYVVDGHCIR-TIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLVKEAAVEVNIDPEKAEQLYQSISEKLN
4P9C Chain:E ((12-138))
---------YMKTAELFSQVSNCKRMKVGAIVVKNGSILAHGWNGTPSGFHTNC----CELEDGSTNPFVLHAEQNALVKMAKSSESIDGSELFCTHSPCPDCSKMIAQAGVKKVYYRNEYRITD-GIDVLQQLGVEVEKM-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4P9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103711 for 1006 contacts (-103.1/contact) +
2D Compatibility (PS) -13547 + (NN) -5601 + (LL) 4992
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: -129917.0 ( -129.14 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_4P9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P9C-query.scw
PDB file :
Tito_Scwrl_4P9C.pdb
: