Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRCSTKEMRLVYRDFLLQANQENKQITVLEADLSSSMST-----------NVLASEFGKRYINLGIMEAEMVGLAAGLAIKG--YKPYLHTFGPFASRRVFDQVFLSLGYSQLSATIIGSDAGVSAEMNGGTHMPFEELGLLRLIPKATIFEVSDDIQFEAILKQTLSI-DGLKYIRTIRKAPTAVY-EGCEDFSKGFIQLR--QGKDIALVASGIMVSRAIEAADYLKELGIEASVIDLFKIKPLPEELKPLL---I--DQSIVTIENHNRIGGIGSALCEWLSMEKDTTVSRMGIDERFGQVGQMKYLLEEYGLAVKDIVEHCKSIYKS |
| 1GPU Chain:A ((356-665)) | -----VATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFV-SYAAGAVRLS-ALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLA-TTCWGK-----------YAHQSFGI-DRFGASGKAPEVFKFFGFTPEGVAERAQKTIAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GPU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164397 for 2617 contacts (-62.8/contact) +
2D Compatibility (PS) -30860 + (NN) -8542 + (LL) 1644
1D Compatibility (HY) -7600 + (ID) 3650
Total energy: -213405.0 ( -81.55 by residue)
QMean score : 0.406
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