Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTPKKILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFGTDMNG--TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL
1V2X Chain:A ((20-168))
---------------------------------------------------------------------------------------------------QPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTG--GVPTFNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL
General information:
TITO was launched using:
RESULT:
Template:
1V2X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104011 for 1187 contacts (-87.6/contact) +
2D Compatibility (PS) -16444 + (NN) -10398 + (LL) 6684
1D Compatibility (HY) -7600 + (ID) 2350
Total energy: -134119.0 ( -112.99 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1V2X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V2X-query.scw
PDB file :
Tito_Scwrl_1V2X.pdb
: