Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKFFLESERLIIRPLEESDYDSWY----TSFMNRGPSLTPFDDGILDMSMCDINWFKNLVNLQ---RKEWE-SDIVYIFGVFLKSGEHVGMLNIVTLARADMQWGELGYVFHNQFWSNGYAFESILALLNSTYEKLGFHHIEAQITPGNERSENLVRRLGLTYETTRKDFSFENGKWTDKLIYSINLHNNNLE
2VZY Chain:A ((9-192))
--DLRITTPRLQLQLPTEELCDQLIDTILE-----------------------EDLPFNTLSHLWQQLAGFKRDDWSLPLAVLVD-GRAVGVQALSSKDFPITRQVDSGSWLGLRYQGHGYGTEMRAAVLYFAFAELEAQVATSRSFVDNPASIAVSRRNGYRDNGLDRVAR--EGAMAEALLFRLTRDDWQRH
General information:
TITO was launched using:
RESULT:
Template:
2VZY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94531 for 1116 contacts (-84.7/contact) +
2D Compatibility (PS) -16984 + (NN) -4669 + (LL) 896
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -118488.0 ( -106.17 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_2VZY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZY-query.scw
PDB file :
Tito_Scwrl_2VZY.pdb
: