Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------MKKFQFFLLVEAV----------VLVMGLMKILSDDWTSFIFILALILLALRFYNNDSRHNFLLTTSLLLLFL----IFMLNPYIIAAV--VFAVLYVLI-NH-FSQVKKKNRYALIQFKNHQLDVKTTRN-QWLGTDQHESDFYDFEDINIIRISGTDTIDLTNVIVSGQDNVIIIQKVFGDTKVLVPLDVAVK----ADISSVYGSVQYFDFEEYDLRNESIKLSQEEEYYLLKRVKLVVNTIAGKVEVSRK |
4RGP Chain:A ((2-256)) | NATEQETLTILLDVYAYYQAYQIVKASQFFSDDIIFLLELLKERRELNVDFLFQNQVHLQELELTYHISLLDNAYEEELLANYIMDLEAKLRNDHIIDFVRSVSPILYRLLMRLMQSQVADINDY-IYDAKNDQYDTWKFDKMHDSANPFVQNFVAKGRDSKITSRSLADFIQLTDLPQAIKDNILLLRDFEKS--VRNPLAHLIKPFDEEELHRTTG------FSSQTFLEKIIQLAVFSGIHY-DNDKFYFDKVNELIKRIYQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124029 for 1541 contacts (-80.5/contact) +
2D Compatibility (PS) -22765 + (NN) -6288 + (LL) 868
1D Compatibility (HY) -8800 + (ID) 2250
Total energy: -163264.0 ( -105.95 by residue)
QMean score : 0.205
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